Quest Compute Cluster Release Notes

Quest Compute Cluster Release Notes#

Major updates to Northwestern’s HPC system Quest are documented here.

OS and Storage Update - 31 March 2025

  • Updated operating system on all nodes from RHEL7 to RHEL8.

  • Storage migration

  • Flash storage addition

  • Firewall changes

  • Replaced many system libraries with modules

List of Modules Replacing Previous System Libraries

RHEL7 System Library

Module on RHEL8

libasound.so.2

alsa-lib/1.2.3.2-gcc-4.8.5

libatk-bridge-2.0.so.0

at-spi2-atk/2.38.0-gcc-4.8.5

libatspi.so.0

at-spi2-core/2.48.0-gcc-4.8.5

libcrypto.so.10

openssl/1.0.2k-gcc-4.8.5

libgcrypt.so.11

libgcrypt/1.5.3-gcc-4.8.5

libdrm.so.2

libdrm/2.4.110-gcc-4.8.5

libgbm.so.1

mesa/20.2.1-gcc-4.8.5

libgdk-3.so.0

gtkplus/3.24.26-gcc-4.8.5

libgfortran.so.3

gcc/4.8.5-gcc-4.8.5

libGL.so.1

mesa/20.2.1-gcc-4.8.5

libGLU.so.1

mesa-glu/9.0.2-gcc-4.8.5

libglut.so.3

freeglut/3.0.0-gcc-4.8.5

libffi.so.7

libffi/3.3-gcc-4.8.5

libevent-2.0.so.5

libevent/2.0.21-gcc-4.8.5

libidn.so.11

libidn/1.28-gcc-4.8.5

libltdl.so.7

libtool/2.4.7-gcc-4.8.5

libpq.so.5

postgresql/9.6.12-gcc-4.8.5

libXv.so.1

libxv/1.0.10-gcc-4.8.5

libopenjp2.so.7

openjpeg/2.3.1-gcc-4.8.5

libepoxy.so.0

libepoxy/1.4.3-gcc-4.8.5

libnotify.so.4

libnotify/0.7.9-gcc-4.8.5

libgcrypt.so.11

libgcrypt/1.5.3-gcc-4.8.5

libxslt.so.1

libgcrypt/1.10.2-gcc-4.8.5

libicudata.so.50

icu4c/50.2-gcc-4.8.5

libicui18n.so.50

icu4c/50.2-gcc-4.8.5

libicuuc.so.50

icu4c/50.2-gcc-4.8.5

libodbc.so.2/libodbcinst.so.2

unixodbc/2.3.4-gcc-4.8.5

libpng12.so.0

libpng/1.2.57-gcc-4.8.5

libpng15.so.15

libpng/1.5.30-gcc-4.8.5

libpq.so.5

postgresql/9.6.12-gcc-4.8.5

libtinfow.so.5

ncurses/5.9-gcc-4.8.5

libreadline.so.6

readline/6.3-gcc-4.8.5

libXpm.so.4

libxpm/3.5.12-gcc-4.8.5

libssl.so.10

openssl/1.0.2k-gcc-4.8.5

libX11-xcb.so.1

libx11/1.8.4-gcc-4.8.5

libXp.so.6

libxp/1.0.3-gcc-4.8.5

libXss.so.1

libxscrnsaver/1.2.2-gcc-4.8.5

libXtst.so.6

libxtst/1.2.3-gcc-4.8.5

libhdf5.so.8

hdf5/1.8.12-gcc-4.8.5

libnetcdf.so.7

netcdf-c/4.3.3.1-gcc-4.8.5

libQt3Support.so.4

qt/4.8.7-gcc-4.8.5

libQtCLucene.so.4

qt/4.8.7-gcc-4.8.5

libQtCore.so.4

qt/4.8.7-gcc-4.8.5

libQtDBus.so.4

qt/4.8.7-gcc-4.8.5

libQtDeclarative.so.4

qt/4.8.7-gcc-4.8.5

libQtDesignerComponents.so.4

qt/4.8.7-gcc-4.8.5

libQtDesigner.so.4

qt/4.8.7-gcc-4.8.5

libQtGui.so.4

qt/4.8.7-gcc-4.8.5

libQtHelp.so.4

qt/4.8.7-gcc-4.8.5

libQtMultimedia.so.4

qt/4.8.7-gcc-4.8.5

libQtNetwork.so.4

qt/4.8.7-gcc-4.8.5

libQtOpenGL.so.4

qt/4.8.7-gcc-4.8.5

libQtScript.so.4

qt/4.8.7-gcc-4.8.5

libQtScriptTools.so.4

qt/4.8.7-gcc-4.8.5

libQtSql.so.4

qt/4.8.7-gcc-4.8.5

libQtSvg.so.4

qt/4.8.7-gcc-4.8.5

libQtTest.so.4

qt/4.8.7-gcc-4.8.5

libQtWebKit.so.4

qt/4.8.7-gcc-4.8.5

libQtXmlPatterns.so.4

qt/4.8.7-gcc-4.8.5

libQtXml.so.4

qt/4.8.7-gcc-4.8.5

libcairo-gobject.so.2

cairo/1.16.0-gcc-4.8.5

libICE.so.6

libsm/1.2.3-gcc-4.8.5

libSM.so.6

libsm/1.2.3-gcc-4.8.5

libXm.so.4

motif/2.3.8-gcc-4.8.5

libblas.so.3

netlib-lapack/3.4.2-gcc-6.4.0

liblapack.so.3

netlib-lapack/3.4.2-gcc-6.4.0

libOpenCL.so.1

ocl-icd/2.2.12-gcc-4.8.5

libnotify.so.4

libnotify/0.7.9-gcc-4.8.5
Module Deprecation - 17 February 2025

Outdated and unused modules will be removed. These modules are no longer recommended for use and have been deprecated since October 21, 2024.

List of Modules Deprecated

  • ADF/2014.04, ADF/2016.107, ADF/2017.105, ADF/2017.112, ADF/2020.102, ADF/2021.102

  • ATACgraph/latest

  • ATLAS/3.10.1-grail, ATLAS/3.10.1-quest1, ATLAS/3.10.1-quest2, ATLAS/3.10.3-quest4, ATLAS/3.10.3-quest5, ATLAS/3.10.3-quest6

  • Ansys-Fluent/18.2, Ansys-Fluent/19.4

  • AnsysEM/18.2, AnsysEM/19.4

  • BBMap/38.90

  • BCBToolKit/2018

  • CfitsIO/3.49

  • CrisprCasFinder/4.2.20

  • FastTreeMP/2.1.10

  • GRASS/7.8.4

  • Gaussian.E01/g09, Gaussian/g09, Gaussian16/g16_sse4

  • GeneTorrent/3.8.6

  • GenomeBrowse/1, GenomeBrowse/3

  • GeoMx/2.3.3.10

  • GotoBlas/GotoBlas-quest2, GotoBlas/GotoBlas-quest3, GotoBlas/GotoBlas-quest4

  • HiFi-human-WGS-WDL/1.0.3

  • IRFinder/2.0.0

  • ImageJ/1.51

  • ImageMagick/7.0.6

  • M-CRIB-S/LastDrawEMVersion

  • M-CRIB-S/1.1

  • MS-Ropen/3.4.2

  • NAMD/namd-2.9-impi, NAMD/namd-2.9-ompi-gcc, NAMD/namd-2.9-ompi-intel, NAMD/2.12, NAMD/2.13-smp, NAMD/2.13

  • OpenBugs/3.2.3

  • PRScsx/1.0.0

  • PRSice/2.3.3

  • R/2.15.3, R/3.0.2, R/3.1.2, R/3.4.3, R/3.4.4, R/3.5.1a

  • SOAPdenovo2/r240

  • STAR-Fusion/1.4.0, STAR-Fusion/1.9.0

  • SimBA/1.55, SimBA/1.77.9

  • SolexaQA++/3.7.1

  • SuiteSparse/4.0.2

  • Tramonto/4.0.1

  • Unifying-Privacy-Policy-Detection/2.0.0

  • abaqus/6.11-2, abaqus/6.12-2, abaqus/2016, abaqus/2017, abaqus/2019

  • abinit/8.10.3-openmpi-4.0.5-intel-19.0.5.281

  • alphafold/2.2.4-only-msas-and-alphafold-config-yaml

  • ambertools/17

  • ampl/ampl-intel64, ampl/20160919, ampl/20220730

  • anaconda3/2018.12.BAK

  • anicalculator/2014

  • ansys/19.4, ansys/2021R2

  • ansysedt/2023R2

  • ant/1.10.7-gcc

  • anvio/2.1.0, anvio/5.4.0

  • apptainer/1.1.8

  • arcasHLA/0.5.0

  • armadillo/8.300.4

  • aspect/2.6.0-debug, aspect/2.6.0-release

  • aspera/3.10.0

  • assimp/5.0.1-gcc

  • at-spi2-atk/2.0.2, at-spi2-core/2.28.0

  • atk/2.36

  • atom/1.57.0

  • autoconf-archive/2019.01.06-gcc, autoconf-archive/2023.02.20-gcc-4.8.5, autoconf-archive/2023.02.20-gcc-10.4.0

  • autoconf/2.68, autoconf/2.69-gcc, autoconf/2.69-gcc-4.8.5, autoconf/2.69-gcc-10.4.0, autoconf/2.69-intel, autoconf/2.69-intel-2021.4.0, autoconf/2.69

  • automake/1.14, automake/1.14.1, automake/1.15, automake/1.16, automake/1.16.3-gcc, automake/1.16.3-intel, automake/1.16.5-gcc-4.8.5, automake/1.16.5-gcc-10.4.0, automake/1.16.5-intel-2021.4.0

  • avogadro/1.2.0

  • azure-cli/2.31.0

  • bamtools/2.5.2-gcc-10.4.0

  • baron/1.82

  • bart/0.7.00-gcc-10.2.0, bart/0.7.00

  • basespace/0.8.1

  • bazel/0.3.1

  • bcbio_nextgen/1.2.4

  • bcl2fastq/2.17.1.14

  • bdftopcf/1.0.5-gcc, bdftopcf/1.0.5-intel

  • berkeley-db/18.1.40-gcc-4.8.5

  • beta/1.0.7

  • bidscoin/3.0.8, bidscoin/3.7.2

  • binutils/2.25.1, binutils/2.37_new

  • bis35/2016

  • bismarkmultimappinglocations/master

  • bison/3.8, bison/3.8.2-gcc, bison/3.8.2-gcc-10.4.0, bison/3.8.2-intel

  • blas-lapack/3.4.0_intel, blas-lapack/3.7.0_gcc, blas-lapack/3.8.0_gcc, blas-lapack/3.8.0_intel

  • blast/2.4.0, blast/2.11.0

  • blatsuite/36

  • blaze/3.8-intel

  • blcr/0.8.4, blcr/0.8.5, blcr/0.8.6.b4

  • boost/1.55, boost/1.57.0, boost/1.58.0, boost/1.64.0, boost/1.70.0-openmpi-4.0.5-intel-19.0.5.281, boost/1.70.0, boost/1.77.0-gcc, boost/1.78.0, boost/1.79.0-gcc, boost/1.79.0, boost/1.81.0-gcc-10.4.0, boost/1.81.0

  • braker/2.1.6

  • bsmap/2.90

  • bwrap/0.4.1

  • cairo/1.16-gcc-8.4.0

  • capnproto/0.5.0, capnproto/0.10.2

  • casa/5.3.0

  • cassi/2.51

  • celloracle/0.12.1

  • cellprofiler/4.2.5_singularity, cellprofiler/4.2.5

  • cellranger-atac/1.1.0

  • cellranger/2.0.2, cellranger/3.0.1

  • centrifuge/1.0.4

  • cgal/4.9_rhel7, cgal/5.4

  • charm/charm-6.5.0-impi, charm/charm-6.5.0-ompi-gcc, charm/charm-6.5.0-ompi-intel

  • charmpp/6.10.2-openmpi-intel-2021.4.0

  • chemaxon_marvin/18.23

  • chemaxon_structure_rep/18.23

  • chimera/1.14

  • chrome/54, chrome/72

  • clair3/1.0.1

  • cloog/0.18.4

  • cmake/3.1.0, cmake/3.21.4-intel

  • cmdstan/2.18.0

  • cobra/0.19.0

  • coinutils/2.11.6

  • compass/1.0.0

  • compositeproto/0.4.2-gcc

  • comsol/6.0_mse_emery, comsol/6.0_upgrade, comsol/6.0, comsol/6.1_koch

  • connectome_workbench/1.4.2a

  • copasul/0.8.19

  • cp2k/2.3, cp2k/2.5, cp2k/5.1

  • cpio/2.13-gcc-10.4.0, cpio/2.13-intel, cpio/2.13-intel-2021.4.0

  • cplex/12.6.2 cplex/22.1.1

  • crass/1.0.1

  • crispresso2/2.2.9

  • crisprtools/0.1.8

  • cromwell/86

  • cuda/cuda_4.0.17, cuda/cuda_4.1.28, cuda/cuda_5.0.35, cuda/cuda_6.0.26_rc, cuda/cuda_7.0.28_mpich, cuda/cuda_7.0.28, cuda/cuda_7.5.18_mpich, cuda/cuda_8.0.61_mpich, cuda/11.2.2-intel

  • cufflinks/2.1.1, cufflinks/2.2.1b

  • curl/7.79.0-intel, curl/8.0.1-intel-2021.4.0

  • cutruntools/2.0

  • cython/0.22

  • cytoscape/3.4.0

  • damageproto/1.2.1-gcc

  • dbus/1.12.8-gcc

  • dcm2niix/v1.0.20220720

  • ddd/3.3.12

  • dealii/9.5.0

  • diamond/0.8.29

  • dicom/3.6.7

  • diffreps/1.55.3

  • diffutils/3.8-gcc, diffutils/3.8-intel, diffutils/3.8-intel-2021.4.0, diffutils/3.9-gcc-4.8.5, diffutils/3.9-gcc-10.4.0

  • double-conversion/3.1.5-gcc

  • doxygen/1.9.2-gcc

  • dsi_studio/latest

  • dtiplayground/0.4.1, dtiplayground/0.4.4b4

  • dynare/4.5.0, dynare/4.5.6

  • dyninst/9.3.2

  • eclipse/4.2

  • eigen/3.2.8, eigen/3.4.0-gcc, eigen/3.4.0-intel

  • elfutils/0.176

  • emacs/24.4-compute, emacs/25.3-compute

  • energyplus/23.1.0

  • enrich2/1.3.1

  • epacts/3.3.2

  • epic2/0.0.52

  • esmfold/2.0.1

  • espresso/5.0.3, espresso/6.2-d3q, espresso/6.2

  • expansionhunter/2.5.5

  • expat/2.2.0

  • fMRIPrep/20.2.1

  • fastq_utils/0.25.2

  • faststructure/1.0

  • fenics27/1.5.0

  • fftw/2.1.5-gcc, fftw/2.1.5-intel, fftw/2.1.5-mpich-intel, fftw/2.1.5-ompi-intel, fftw/3.3.3-gcc-sse2, fftw/3.3.4-openmpi-4.0.5-intel-19.0.5.281

  • findutils/4.8.0-gcc, findutils/4.8.0-intel, findutils/4.9.0-gcc-10.4.0

  • firefox/14, firefox/22, firefox/26, firefox/27, firefox/31, firefox/50

  • fixesproto/5.0-gcc

  • flex/2.6.3-gcc, flex/2.6.3-gcc-10.4.0, flex/2.6.3-intel, flex/2.6.4

  • flook/0.8.1

  • fmriprep/21.0.1, fmriprep/23.0.1_singularity, fmriprep/23.0.1

  • font-util/1.3.2-intel

  • fontconfig/2.13.1-gcc

  • fontsproto/2.1.3-gcc, fontsproto/2.1.3-intel

  • fragpipe/19.1

  • freeimage/3.18.0-gcc

  • freesurfer/7dev

  • freetype/2.7.1-intel, freetype/2.10.2-gcc, freetype/2.10.4-gcc-10.2.0

  • fribidi/1.0.5-intel

  • games/2.0.0

  • gap/4.7.5

  • gatk/3.6.0, gatk/4.0.0, gatk/4.0.4

  • gauss/gauss17

  • gawk/5.2.1-gcc-4.8.5, gawk/5.2.1-gcc-10.4.0

  • gcc/mine, gcc/4.7.0

  • gcloud/322.0.0

  • gcta/1.94.0

  • gdb/7.5, gdb/7.12, gdb/8.0.1

  • gdbm/1.18.1-intel-19.0.5.281, gdbm/1.19-intel-19.0.5.281, gdbm/1.23-gcc-4.8.5

  • gdc-client/1.3.0

  • gdk-pixbuf/2.40.0

  • geany/1.33

  • genie/3.04.00

  • gettext/0.19.4, gettext/0.21-intel-19.0.5.281, gettext/0.21.1-gcc-4.8.5

  • ghc/7.10.3, ghc/8.2.1

  • giflib/5.2.1-gcc-10.4.0

  • git/2.1.3

  • glib/2.66.2

  • glibc/2.17

  • glibmm/2.4

  • glproto/1.4.17-gcc

  • gmake/4.3-gcc, gmake/4.4.1-intel-2021.4.0

  • gnomix/12082022

  • gnumeric/1.12.38

  • go/1.20.4

  • gold/1

  • gpaw/21.1.0

  • gperf/3.1-gcc, gperf/3.1-intel

  • gradle/5.2.1

  • graphlib/3.0.0

  • grass-gis/7.8.8

  • gromacs/4.6.5, gromacs/4.6.7-cuda, gromacs/4.6.7

  • gsl/1.16-intel, gsl/2.1-gcc4.8.3

  • gstreamer/1.14

  • gtk+/gtk+-3.22.30

  • gtool/0.7.5

  • gulp/6.1.2

  • guppy/6.2.1_cpu, guppy/6.2.1_gpu

  • gurobi/6.5.2, gurobi/7.5.1, gurobi/7.5.1-3.6, gurobi/9.1.0

  • gwastools/current

  • hdf5/1.10.7-nvhpc-gcc-10.4.0

  • hemoMIPs/1.1

  • hipstr/0.6.2

  • hisat2/2.0.4

  • homer/4.8.3

  • hwloc/1.4.2, hwloc/1.11.8

  • hypre/2.9.0, hypre/2.20.0-openmpi-4.0.5-gcc-10.2.0

  • icu4c/67.1-intel

  • idba/2016_12_longread, idba/2016_12

  • idr/2.0.4

  • igv/2.8.13, igv/2.11.6, igv/2.12.0

  • impute2/2.3.2

  • imsl/fnl_7.1.0

  • indelocator/1.0

  • inputproto/2.3.2-intel

  • intel-oneapi-compilers/2023.1.0-gcc-10.4.0

  • intel-oneapi-mkl/2021.4.0-gcc

  • intel-oneapi-mpi/2021.4.0-intel

  • intel-oneapi-tbb/2021.4.0-gcc

  • intltool/0.40.0, intltool/0.51.0

  • ipopt/3.13.2

  • iread/0.8.5

  • jags/4.2.0, jags/4.3.0_qa, jags/4.3.0-gcc-5.1.0

  • jellyfish/2.2.7, jellyfish/2.3.0

  • jsoncpp/1.9.4-gcc, jsoncpp/1.9.5-gcc-10.4.0

  • julia/0.5.2, julia/0.6.2, julia/1.3.1

  • kSNP/3.0.21

  • kallisto/0.43.1

  • kbproto/1.0.7-intel

  • knitro/9.1.orig, knitro/9.1

  • krona/2.7

  • lammps/lammps-gcc-mkl, lammps/lammps-intel-mkl, lammps/lammps-intel, lammps/lammps-mpich, lammps/lammps-31Mar17-mpich

  • launchmon/1.0.1

  • layoutparser/0.3.2

  • lazarus/2.0.10

  • lcms/2.9-gcc, lcms/2.13.1

  • ldblockshow/1.40

  • ldsc/1.0.0

  • leptonica/1.74.4

  • lftp/4.8.4-fedora, lftp/4.8.4

  • libdrm/2.4.100-gcc

  • libdwarf/20190110

  • libedit/3.1-20210216-gcc

  • libepoxy/1.2

  • libffi/3.2.1

  • libfontenc/1.1.3-gcc, libfontenc/1.1.3-intel

  • libgcrypt/1.10.2-gcc-10.4.0

  • libgdiplus/2.10.9

  • libgpg-error/1.47-gcc-10.4.0

  • libice/1.0.9-intel

  • libiconv/1.17-gcc-4.8.5

  • libidn2/2.3.0-intel

  • libjpeg-turbo/2.1.0-intel

  • libjpeg/8

  • libmng/2.0.3-gcc

  • libpciaccess/0.16-intel

  • libpng/1.6.37-intel

  • libpthread-stubs/0.4-intel

  • libsigsegv/2.14-gcc-4.8.5, libsigsegv/2.14-gcc-10.4.0

  • libsm/1.2.3-intel

  • libsvm/3.21

  • libtiff/4.1.0, libtiff/4.3.0-gcc

  • libtool/2.4.2, libtool/2.4.6-gcc, libtool/2.4.6-intel, libtool/2.4.6, libtool/2.4.7-gcc-4.8.5, libtool/2.4.7-gcc-10.4.0, libtool/2.4.7-intel-2021.4.0

  • libunistring/0.9.10-intel

  • libvdwxc/0.4.0-openmpi-4.0.5-intel-19.0.5.281

  • libwayland-cursor/1.18.91

  • libx11/1.7.0-intel

  • libxau/1.0.8-intel

  • libxc/2.2.2-intel-19.0.5.281, libxc/5.1.0, libxc/6.1.0-intel-2021.4.0

  • libxcb/1.8, libxcb/1.14-intel

  • libxcomposite/0.4.4-gcc

  • libxcursor/1.1.14-gcc

  • libxdamage/1.1.4-gcc

  • libxdmcp/1.1.2-intel

  • libxext/1.3.3-intel

  • libxfixes/5.0.2-gcc

  • libxfont/1.5.2-gcc, libxfont/1.5.2-intel

  • libxi/1.7.6-gcc

  • libxkbcommon/0.8.2-gcc

  • libxkbfile/1.0.9-gcc

  • libxml2/2.10.3-gcc-4.8.5

  • libxmu/1.1.2-intel

  • libxrandr/1.5.0-gcc

  • libxrender/0.9.10-intel

  • libxscrnsaver/1.2.2-intel

  • libxslt/1.1.33-gcc-10.4.0

  • libxsmm/1.16.1-intel-19.0.5.281

  • libxt/1.1.5-intel

  • libxtst/1.2.2-gcc

  • libxxf86vm/1.1.4-gcc

  • llama-cpp-python/0.2.22

  • llvm/12.0.1-gcc, llvm/16.0.6

  • lp_solve/5.5.2.0

  • lsdyna/12.0.0

  • lua/5.1.4, lua/5.1.5

  • lumerical/device-6.0.125, lumerical/8.11.318, lumerical/8.12.631, lumerical/8.17.1057-test, lumerical/8.17.1057, lumerical/2020r2

  • lz4/1.9.3-gcc

  • lzo/2.10-gcc-10.4.0

  • m4/1.4.16-gcc-4.8.5, m4/1.4.16-gcc-10.4.0, m4/1.4.16-intel-2021.4.0, m4/1.4.16-nvhpc-23.3

  • mageck/0.5.6_py27, mageck/0.5.6_py34

  • mageck_vispr/09082016

  • magma/1.10

  • makedepf90/2.8.8

  • maker/2.31.11

  • manta/1.5.0

  • mathematica/10.3.0, mathematica/10.4.1, mathematica/12.0

  • matlab/r2013a, matlab/r2014b, matlab/r2015a, matlab/r2015b, matlab/r2020b_gcc-8.4.0

  • matlabstan/2.15.1.0

  • medaka/1.6.0

  • meep/1.1.1, meep/1.2.1

  • meson/0.60.0-gcc, meson/0.60.0-intel

  • metamap/2016

  • metaphlan/3.0.14, metaphlan/3.1.0

  • metapro/2.2.0

  • metaxa2/2.2

  • metis/5.0.2

  • mgreml/1.0.0

  • minkowskiengine/0.5.4

  • mkfontdir/1.0.7-gcc, mkfontdir/1.0.7-intel

  • mkfontscale/1.1.2-gcc, mkfontscale/1.1.2-intel

  • mlpack/3.0.4

  • modulus/22.03

  • mono/3.4.0, mono/5.0.1.1, mono/6.12.0.199

  • motif/2.3.8

  • mpb/1.5

  • mpc/1.0

  • mpfr/3.1.1

  • mpi/mpich-3.0.4-gcc-4.6.3, mpi/mpich-3.0.4-gcc-4.8.3, mpi/mpich-3.0.4-gcc-5.1.0, mpi/mpich-3.4.2-intel, mpi/mvapich2-gcc-4.8.3-cuda8, mpi/mvapich2-gcc-4.8.3

  • mrnet/4.0.0

  • mrtrix3/2018

  • mujoco-py/2.1.2.14

  • mumps/5.3.5-openmpi-4.0.5-gcc-10.2.0

  • muscle/3.8.31

  • mutect/1.1.4

  • nasm/2.15.05-gcc, nasm/2.15.05-gcc-10.4.0, nasm/2.15.05-intel

  • ncbi-toolkit/26_0_1-gcc-10.4.0

  • ncurses/6.4-gcc-4.8.5, ncurses/6.4-gcc-8.4.0

  • nda-tools/0.2.19-py-3.6, nda-tools/0.2.19-py-3.8, nda-tools/0.2.21-py-3.8, nda-tools/0.2.22-py-3.8

  • ndiff/2.0

  • netcdf-c/4.7.4-openmpi-4.0.5-intel-19.0.5.281, netcdf-c/4.8.1-openmpi-gcc, netcdf-c/4.8.1-openmpi-intel

  • netcdf-cxx/4.2-openmpi-gcc

  • netcdf-fortran/4.5.3-openmpi-intel, netcdf-fortran/4.5.3-openmpi-4.0.5-intel-19.0.5.281

  • netlib-scalapack/2.2.0-openmpi-intel-2021.4.0

  • netlogo/5.3.1, netlogo/6.0.1

  • nextflow/22.04.3

  • nextneopi/1.3.1

  • ngsutils/0.5.9

  • ninja/1.10.2-gcc, ninja/1.10.2-intel

  • nlopt/2.4.2, nlopt/2.6.1

  • nspr/4.31-gcc

  • nss/3.67-gcc

  • nvhpc/21.9-intel

  • nwchem/6.1.1/openmpi-1.6.3-intel2011.3, nwchem/6.5.0, nwchem/6.6.0-patched, nwchem/6.6.0, nwchem/6.6.1

  • ocaml/4.05.0

  • octave/3.6.3, octave/4.2.1

  • oncotator/1.9.8.0

  • openbabel/2.3.0

  • openblas/0.3.18-gcc

  • openmd/2.5, openmd/2.6

  • opera/12.16

  • orca/4.0.1.2

  • osu-micro-benchmarks/5.3.2-mpich, osu-micro-benchmarks/5.3.2

  • oxconsole/7.20

  • oxedit/7.20

  • pBWA/1.21

  • paml/4.10.6

  • pandoc/2.14.0.3-gcc

  • papi/4.1.3

  • paraview/3.98-openmpi, paraview/3.98, paraview/4.4, paraview/5.9.0

  • parsec/1.3.6

  • patchelf/0.13-gcc, patchelf/0.13-intel, patchelf/0.17.2-gcc-10.4.0

  • pbs-drmaa/1.0.19

  • pcntoolkit/0.25-py.3.6, pcntoolkit/0.25

  • pcre/8.39, pcre/8.44-gcc-4.8.5, pcre/8.44-intel, pcre/8.45-gcc-10.4.0, pcre2/10.36-gcc, pcre2/10.42-intel-2021.4.0

  • pdflib-lite/7.0.4p4

  • penncnv/1.0.5

  • perl-data-dumper/2.173-gcc

  • perl/5.14, perl/5.36.0-gcc-4.8.5

  • petsc/3.3-p7, petsc/3.4.4, petsc/3.5.1-shared, petsc/3.5.1-static, petsc/3.7.2-opt, petsc/3.7.2, petsc/3.14.4-openmpi-4.0.5-gcc-10.2.0

  • phamb/master

  • pharmcat/1.6.0

  • phast/1.4

  • phylocsf/latest

  • phyloflash/3.4.2

  • pindel/2017

  • pixman/0.40.0-intel

  • pkg-config/0.27.1

  • pkgconf/1.9.5-gcc-4.8.5

  • plink/1.07, plink/2.0-alpha-2.3, plink/2.0-alpha-3.3

  • plinkseq/0.10

  • plumed/2.6.2-openmpi-4.0.5-intel-19.0.5.281, plumed/2.9.0

  • pnetcdf/1.12.2

  • polyfun/1.0.0

  • poppler/0.47, poppler/0.48

  • povray/3.7

  • prada/1.2

  • proj/6.2.1

  • protobuf/3.1.0, protobuf/3.21.12-gcc-8.4.0

  • pvactools/3.0.1

  • py-cython/0.29.33-gcc-10.4.0

  • py-mako/1.1.4-gcc

  • py-markupsafe/1.1.1-gcc, py-markupsafe/2.0.1-gcc

  • py-pip/23.0-gcc-10.4.0

  • py-setuptools/44.1.0-gcc, py-setuptools/58.2.0-gcc, py-setuptools/58.2.0-intel

  • py-wheel/0.37.1-gcc-10.4.0

  • pypy/2.5.1

  • python/ActivePython-3.2, python/epd-7.3-2

  • qchem/4.0, qchem/4.1.2, qchem/4.3, qchem/4.4, qchem/5.0, qchem/5.2, qchem/5.4

  • qctool/1.0, qctool/1.4, qctool/1.5, qctool/2.0-rc4

  • qe/6.5

  • qhull/2015.2, qhull/2020.1-gcc-10.2.0

  • qiime2/2021.11

  • qsiprep/0.19.1

  • qt/4.6.2, qt/5.0.0

  • qt/5.9.1

  • quast/5.0.2

  • r/4.2.2-gcc

  • random-metal/0.1.0

  • randrproto/1.5.0-gcc

  • readline/6.2, readline/8.0-intel-19.0.5.281, readline/8.2-gcc-4.8.5

  • reco/0.0.1

  • recordproto/1.14.2-gcc, renderproto/0.11.1-intel

  • rfmix/2.0

  • rgt/1.0.0

  • ribotricer/1.3.2

  • rmats2sashimiplot/2.0.3

  • rnaseqc/2.3.5

  • rnashapes/2.1.6

  • root/5.34, root/6.28.02

  • rsem/1.2.28

  • ruby/2.0.0

  • rufus/latest

  • ruptura/latest

  • sage/9.4

  • salmon/0.8.2, salmon/0.9.1, salmon/1.2.1

  • samplot/1.3.0

  • samtools/0.1.19

  • sasview/5.0.6

  • scala/2.12.2

  • scalapack/2.0.2_gcc, scalapack/2.0.2_intel

  • scallop/0.9.8

  • scons/2.5.0

  • scrnaseq/2.0.0

  • scrnsaverproto/1.2.2-intel

  • sdpt3/4.0

  • shapeit/v2.r837

  • simbaathena/1.1.18

  • sirius/6.5.7-openmpi-4.0.5-gcc-10.2.0

  • slepc/3.7.4

  • slurm-drmaa/latest

  • smrtlink/11.0.0.146107

  • snpEff/4.3, snpEff/5.1

  • snptest/2.5, snptest/2.5.2

  • soapdenovo2/2.04-r240

  • soci/4.0.2-gcc

  • specfem3d_globe/7.0.0

  • speedseq/0.1.2-with-cnvnator, speedseq/0.1.2

  • spla/1.3.0-openmpi-4.0.5-intel-19.0.5.281

  • spyder/5.4.3

  • sqlite/3.19.2, sqlite/3.19.3

  • sratoolkit/2.8.0

  • stacks/2.64-gcc-9.2.0

  • stat/4.0.1

  • stata/14-b1041

  • stattransfer/14, stattransfer/15

  • stockfish/15.1

  • strdenovotools/1.0.0

  • strelka/2.9.2

  • stress/latest

  • stringtie/1.3.0

  • subread/1.5.1, subread/1.6.1

  • superlu-dist/6.4.0-openmpi-4.0.5-gcc-10.2.0

  • superlu/5.2.0

  • suppa/2.3

  • swig/3.0.0, swig/3.0.10, swig/3.0.12, swig/4.0.2_gcc-4.8.5, swig/4.0.2-gcc

  • talon/5.0

  • tar/1.34-gcc-4.8.5

  • tau/2.23.1

  • tcl/8.6.11-intel, tcl/8.6.12-intel-2021.4.0

  • telseq/2.4.1

  • tesseract/3.05.01

  • texinfo/6.5-gcc, texinfo/6.5-intel, texinfo/7.0.3-gcc-4.8.5, texinfo/7.0.3-gcc-10.4.0

  • texlive/2012

  • thermo-calc/2022b

  • tickwrite/7.1

  • tig/2.5.1

  • tobias/0.13.3

  • tomlab/277

  • toppic/1.5.3

  • tpp/6.0.0

  • trinity/2.14.0

  • uchime/4.2.40

  • unibind/latest

  • unirep/11_18_2022

  • util-macros/1.19.3-gcc, util-macros/1.19.3-gcc-10.4.0, util-macros/1.19.3-intel

  • valgrind/3.13.0

  • vasp/4.6.38, vasp/5.3, vasp/5.3.3.vtst, vasp/5.3.3, vasp/5.3.5.vtst.beef, vasp/5.3.5, vasp/5.4.1_intel_ompi, vasp/5.4.1_vtst, vasp/5.4.4-openmpi-4.0.5-intel-19.0.5.281-cuda-11.2.1, vasp/5.4.4-vtst-openmpi-4.0.5-intel-19.0.5.281

  • vcftools/current, vcftools/0.1.14, vcftools/0.1.15

  • vcontact2/0.11.0

  • velvet/1.2.10

  • vesta/3.4.4

  • viennaRNA/2.5.0

  • vim/8.0.2.7

  • visit/2.6.0, visit/2.12.2

  • voxcraft-sim/3.0

  • vtk/9.2.5

  • wannier/2.1.0_new, wannier/2.1.0

  • which/2.21-gcc

  • wine/2.0

  • wxwidgets/3.1.2

  • xander_assembler/2017

  • xcb-proto/1.14.1-intel

  • xcb-util-image/0.4.0-gcc, xcb-util-keysyms/0.4.0-gcc, xcb-util-renderutil/0.3.9-gcc, xcb-util-wm/0.4.1-gcc, xcb-util/0.4.0-gcc

  • xerces-c/3.1.1, xerces-c/3.2.3

  • xextproto/7.3.0-intel

  • xf86vidmodeproto/2.3.1-gcc

  • xkbcomp/1.4.4-gcc

  • xkbdata/1.0.1-gcc

  • xpdf/4.02

  • xproto/7.0.31-intel

  • xrandr/1.5.0-gcc

  • xtrans/1.3.5-intel

  • xz/5.4.1-gcc-4.8.5

  • yaml-cpp/0.5.3, yaml-cpp/0.6.3-gcc, yaml-cpp/0.7.0

  • yarn/1.22.4-gcc

  • z3/4.8.9-gcc

  • zlib/1.3

  • zsh/5.8-gcc-4.8.5

Quest Analytics R and RStudio Version Change - 9 October 2024

  • Updated R version on Quest Analytics Nodes from R 4.2.3 to R 4.4.0

  • Updated RStudio version to 2023.12.2-407

  • Implemented configuration change to end inactive R sessions after 12 hours