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Getting Started

  • Introduction to Quest
  • Genomics Compute Cluster Quick Start
  • HPC Best Practices
  • Getting Help

System Guides

  • Quest Compute Cluster
    • Quest Overview
    • User Guide
      • Logging In
      • File System
      • Transferring Data
      • Software Modules
      • Slurm Job Scheduler
      • GPUs
      • Getting Allocation Information
    • Compute and Storage Resources
    • Software
      • AlphaFold
      • Knitro
      • MATLAB
      • Python
      • R/RStudio
      • VASP
    • Policies and Guidelines
    • Quest Analytics Nodes
      • Analytics Nodes Usage Tips
    • Quest OnDemand
    • Genomics Compute Cluster
    • Maintenance Release Notes
  • Research Data Storage Service
    • Service Overview
    • Share Management
    • User Guide
    • Troubleshooting Guide
  • Globus
    • Log in
    • Access Data Using Collections
    • Transfer Files
    • Share Data
    • Troubleshoot

Tutorials

  • Software Management on Quest
    • Mamba or Conda Virtual Environments
    • Git on Quest
    • Singularity on Quest
    • Compiling Code on Quest
  • Python
    • Installing Python on Your Computer
    • Python Selenium on Quest
    • Using GPUs with Python
  • R
    • Installing R/RStudio on Your Computer
    • Git with R
  • Git/GitHub
    • Downloading Workshop Materials
    • Git with R

Resource Guides

  • Command Line
    • Getting Started with the Command Line
    • Bash Scripting
  • Python
    • Programming in Python
    • Pandas
    • Deep Learning Frameworks
  • R
    • Learning R
    • ggplot2
  • Statistics
    • Clustering
    • Linear Regression
  • Additional Tools
    • Git and GitHub
    • SQL

Quest User Guide

Quest User Guide#

Learn how to use Quest and reference common commands and job scheduler options. New to Quest? Start with the Getting Started guide instead.


Connect to Quest

Overview SSH FastX Quest OnDemand Quest Analytics Nodes


Storage

Overview Home Directory Projects Directory Scratch Storage Data Security Guidance


Data Transfer

Overview Globus Command Line


Software Access

Using Software Modules Available Software Modules Software Application Tutorials Software Management Tutorials


Job Scheduler

Overview Submission Script Slurm Options Managing Jobs Troubleshooting


GPUs

Overview GPU software


Allocation Management

Allocation Management Utilities Renew or Increase Your Allocation Share Your Allocation


Browser-based Environments

Quest Analytics Nodes Quest OnDemand


Genomics Compute Cluster

Getting Started Allocation Reference


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Last updated: 2025-07-31
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