Quest Compute Cluster Maintenance and Update Notes

Quest Compute Cluster Maintenance and Update Notes#

Major updates to Northwestern’s HPC system Quest are documented here.

Storage file count limits - November 2026

  • Applied file count limits to each Quest storage location to maintain file system performance and stability. In addition to size quotas, home folders allow 15,000 files per GB, project folders allow 10,000 files per GB, and scratch folders allow 5 million files.

  • See the Filesystem documentation for guidance on checking usage and staying within these limits.

ColdFront Platform Launch - June 2026
Slurm and GPU performance updates - June 2026

  • Upgraded Quest’s job scheduler, Slurm, to version 25.11.5 that provides options for faster job recovery and improved job monitoring. Reference the full Slurm changelog for details.

  • Updated the GPU driver to CUDA 13.3 for improved GPU performance, enhanced libraries, updated tooling, and support for emerging AI models.

  • Upgraded GPU-to-GPU communications: Multi-GPU jobs can now utilize direct GPU-to-GPU communication with the new CUDA-aware UCX upgrade.

  • Updated FastX to version 4 to provide a more reliable and secure remote desktop experience.

  • Upgraded the storage system firmware and InfiniBand interconnect drivers and applied security patches to system software to enhance cluster stability.

  • Performed power and cooling equipment maintenance to ensure the healthy operation of the computing infrastructure.

Slurm and license server updates - September 2025

  • Upgraded Quest’s job scheduler, Slurm, to version 24.11.6. Reference the full Slurm changelog for details.

  • Upgraded the license server for licensed software on Quest and applied patches to all nodes to improve the security of the cluster.

  • Upgraded the storage system firmware and InfiniBand interconnect drivers to enhance cluster stability.

  • Performed power and cooling equipment maintenance to ensure the healthy operation of the computing infrastructure.

OS and Storage Update - 31 March 2025

  • Updated operating system on all nodes from RHEL7 to RHEL8.

  • Storage migration

  • Flash storage addition

  • Firewall changes

  • Replaced many system libraries with modules

List of Modules Replacing Previous System Libraries

RHEL7 System Library

Module on RHEL8

libasound.so.2

alsa-lib/1.2.3.2-gcc-4.8.5

libatk-bridge-2.0.so.0

at-spi2-atk/2.38.0-gcc-4.8.5

libatspi.so.0

at-spi2-core/2.48.0-gcc-4.8.5

libcrypto.so.10

openssl/1.0.2k-gcc-4.8.5

libgcrypt.so.11

libgcrypt/1.5.3-gcc-4.8.5

libdrm.so.2

libdrm/2.4.110-gcc-4.8.5

libgbm.so.1

mesa/20.2.1-gcc-4.8.5

libgdk-3.so.0

gtkplus/3.24.26-gcc-4.8.5

libgfortran.so.3

gcc/4.8.5-gcc-4.8.5

libGL.so.1

mesa/20.2.1-gcc-4.8.5

libGLU.so.1

mesa-glu/9.0.2-gcc-4.8.5

libglut.so.3

freeglut/3.0.0-gcc-4.8.5

libffi.so.7

libffi/3.3-gcc-4.8.5

libevent-2.0.so.5

libevent/2.0.21-gcc-4.8.5

libidn.so.11

libidn/1.28-gcc-4.8.5

libltdl.so.7

libtool/2.4.7-gcc-4.8.5

libpq.so.5

postgresql/9.6.12-gcc-4.8.5

libXv.so.1

libxv/1.0.10-gcc-4.8.5

libopenjp2.so.7

openjpeg/2.3.1-gcc-4.8.5

libepoxy.so.0

libepoxy/1.4.3-gcc-4.8.5

libnotify.so.4

libnotify/0.7.9-gcc-4.8.5

libgcrypt.so.11

libgcrypt/1.5.3-gcc-4.8.5

libxslt.so.1

libgcrypt/1.10.2-gcc-4.8.5

libicudata.so.50

icu4c/50.2-gcc-4.8.5

libicui18n.so.50

icu4c/50.2-gcc-4.8.5

libicuuc.so.50

icu4c/50.2-gcc-4.8.5

libodbc.so.2/libodbcinst.so.2

unixodbc/2.3.4-gcc-4.8.5

libpng12.so.0

libpng/1.2.57-gcc-4.8.5

libpng15.so.15

libpng/1.5.30-gcc-4.8.5

libpq.so.5

postgresql/9.6.12-gcc-4.8.5

libtinfow.so.5

ncurses/5.9-gcc-4.8.5

libreadline.so.6

readline/6.3-gcc-4.8.5

libXpm.so.4

libxpm/3.5.12-gcc-4.8.5

libssl.so.10

openssl/1.0.2k-gcc-4.8.5

libX11-xcb.so.1

libx11/1.8.4-gcc-4.8.5

libXp.so.6

libxp/1.0.3-gcc-4.8.5

libXss.so.1

libxscrnsaver/1.2.2-gcc-4.8.5

libXtst.so.6

libxtst/1.2.3-gcc-4.8.5

libhdf5.so.8

hdf5/1.8.12-gcc-4.8.5

libnetcdf.so.7

netcdf-c/4.3.3.1-gcc-4.8.5

libQt3Support.so.4

qt/4.8.7-gcc-4.8.5

libQtCLucene.so.4

qt/4.8.7-gcc-4.8.5

libQtCore.so.4

qt/4.8.7-gcc-4.8.5

libQtDBus.so.4

qt/4.8.7-gcc-4.8.5

libQtDeclarative.so.4

qt/4.8.7-gcc-4.8.5

libQtDesignerComponents.so.4

qt/4.8.7-gcc-4.8.5

libQtDesigner.so.4

qt/4.8.7-gcc-4.8.5

libQtGui.so.4

qt/4.8.7-gcc-4.8.5

libQtHelp.so.4

qt/4.8.7-gcc-4.8.5

libQtMultimedia.so.4

qt/4.8.7-gcc-4.8.5

libQtNetwork.so.4

qt/4.8.7-gcc-4.8.5

libQtOpenGL.so.4

qt/4.8.7-gcc-4.8.5

libQtScript.so.4

qt/4.8.7-gcc-4.8.5

libQtScriptTools.so.4

qt/4.8.7-gcc-4.8.5

libQtSql.so.4

qt/4.8.7-gcc-4.8.5

libQtSvg.so.4

qt/4.8.7-gcc-4.8.5

libQtTest.so.4

qt/4.8.7-gcc-4.8.5

libQtWebKit.so.4

qt/4.8.7-gcc-4.8.5

libQtXmlPatterns.so.4

qt/4.8.7-gcc-4.8.5

libQtXml.so.4

qt/4.8.7-gcc-4.8.5

libcairo-gobject.so.2

cairo/1.16.0-gcc-4.8.5

libICE.so.6

libsm/1.2.3-gcc-4.8.5

libSM.so.6

libsm/1.2.3-gcc-4.8.5

libXm.so.4

motif/2.3.8-gcc-4.8.5

libblas.so.3

netlib-lapack/3.4.2-gcc-6.4.0

liblapack.so.3

netlib-lapack/3.4.2-gcc-6.4.0

libOpenCL.so.1

ocl-icd/2.2.12-gcc-4.8.5

libnotify.so.4

libnotify/0.7.9-gcc-4.8.5
Module Deprecation - 17 February 2025

Outdated and unused modules were removed. These modules are no longer recommended for use and were deprecated October 21, 2024.

List of Modules Deprecated

  • ADF/2014.04, ADF/2016.107, ADF/2017.105, ADF/2017.112, ADF/2020.102, ADF/2021.102

  • ATACgraph/latest

  • ATLAS/3.10.1-grail, ATLAS/3.10.1-quest1, ATLAS/3.10.1-quest2, ATLAS/3.10.3-quest4, ATLAS/3.10.3-quest5, ATLAS/3.10.3-quest6

  • Ansys-Fluent/18.2, Ansys-Fluent/19.4

  • AnsysEM/18.2, AnsysEM/19.4

  • BBMap/38.90

  • BCBToolKit/2018

  • CfitsIO/3.49

  • CrisprCasFinder/4.2.20

  • FastTreeMP/2.1.10

  • GRASS/7.8.4

  • Gaussian.E01/g09, Gaussian/g09, Gaussian16/g16_sse4

  • GeneTorrent/3.8.6

  • GenomeBrowse/1, GenomeBrowse/3

  • GeoMx/2.3.3.10

  • GotoBlas/GotoBlas-quest2, GotoBlas/GotoBlas-quest3, GotoBlas/GotoBlas-quest4

  • HiFi-human-WGS-WDL/1.0.3

  • IRFinder/2.0.0

  • ImageJ/1.51

  • ImageMagick/7.0.6

  • M-CRIB-S/LastDrawEMVersion

  • M-CRIB-S/1.1

  • MS-Ropen/3.4.2

  • NAMD/namd-2.9-impi, NAMD/namd-2.9-ompi-gcc, NAMD/namd-2.9-ompi-intel, NAMD/2.12, NAMD/2.13-smp, NAMD/2.13

  • OpenBugs/3.2.3

  • PRScsx/1.0.0

  • PRSice/2.3.3

  • R/2.15.3, R/3.0.2, R/3.1.2, R/3.4.3, R/3.4.4, R/3.5.1a

  • SOAPdenovo2/r240

  • STAR-Fusion/1.4.0, STAR-Fusion/1.9.0

  • SimBA/1.55, SimBA/1.77.9

  • SolexaQA++/3.7.1

  • SuiteSparse/4.0.2

  • Tramonto/4.0.1

  • Unifying-Privacy-Policy-Detection/2.0.0

  • abaqus/6.11-2, abaqus/6.12-2, abaqus/2016, abaqus/2017, abaqus/2019

  • abinit/8.10.3-openmpi-4.0.5-intel-19.0.5.281

  • alphafold/2.2.4-only-msas-and-alphafold-config-yaml

  • ambertools/17

  • ampl/ampl-intel64, ampl/20160919, ampl/20220730

  • anaconda3/2018.12.BAK

  • anicalculator/2014

  • ansys/19.4, ansys/2021R2

  • ansysedt/2023R2

  • ant/1.10.7-gcc

  • anvio/2.1.0, anvio/5.4.0

  • apptainer/1.1.8

  • arcasHLA/0.5.0

  • armadillo/8.300.4

  • aspect/2.6.0-debug, aspect/2.6.0-release

  • aspera/3.10.0

  • assimp/5.0.1-gcc

  • at-spi2-atk/2.0.2, at-spi2-core/2.28.0

  • atk/2.36

  • atom/1.57.0

  • autoconf-archive/2019.01.06-gcc, autoconf-archive/2023.02.20-gcc-4.8.5, autoconf-archive/2023.02.20-gcc-10.4.0

  • autoconf/2.68, autoconf/2.69-gcc, autoconf/2.69-gcc-4.8.5, autoconf/2.69-gcc-10.4.0, autoconf/2.69-intel, autoconf/2.69-intel-2021.4.0, autoconf/2.69

  • automake/1.14, automake/1.14.1, automake/1.15, automake/1.16, automake/1.16.3-gcc, automake/1.16.3-intel, automake/1.16.5-gcc-4.8.5, automake/1.16.5-gcc-10.4.0, automake/1.16.5-intel-2021.4.0

  • avogadro/1.2.0

  • azure-cli/2.31.0

  • bamtools/2.5.2-gcc-10.4.0

  • baron/1.82

  • bart/0.7.00-gcc-10.2.0, bart/0.7.00

  • basespace/0.8.1

  • bazel/0.3.1

  • bcbio_nextgen/1.2.4

  • bcl2fastq/2.17.1.14

  • bdftopcf/1.0.5-gcc, bdftopcf/1.0.5-intel

  • berkeley-db/18.1.40-gcc-4.8.5

  • beta/1.0.7

  • bidscoin/3.0.8, bidscoin/3.7.2

  • binutils/2.25.1, binutils/2.37_new

  • bis35/2016

  • bismarkmultimappinglocations/master

  • bison/3.8, bison/3.8.2-gcc, bison/3.8.2-gcc-10.4.0, bison/3.8.2-intel

  • blas-lapack/3.4.0_intel, blas-lapack/3.7.0_gcc, blas-lapack/3.8.0_gcc, blas-lapack/3.8.0_intel

  • blast/2.4.0, blast/2.11.0

  • blatsuite/36

  • blaze/3.8-intel

  • blcr/0.8.4, blcr/0.8.5, blcr/0.8.6.b4

  • boost/1.55, boost/1.57.0, boost/1.58.0, boost/1.64.0, boost/1.70.0-openmpi-4.0.5-intel-19.0.5.281, boost/1.70.0, boost/1.77.0-gcc, boost/1.78.0, boost/1.79.0-gcc, boost/1.79.0, boost/1.81.0-gcc-10.4.0, boost/1.81.0

  • braker/2.1.6

  • bsmap/2.90

  • bwrap/0.4.1

  • cairo/1.16-gcc-8.4.0

  • capnproto/0.5.0, capnproto/0.10.2

  • casa/5.3.0

  • cassi/2.51

  • celloracle/0.12.1

  • cellprofiler/4.2.5_singularity, cellprofiler/4.2.5

  • cellranger-atac/1.1.0

  • cellranger/2.0.2, cellranger/3.0.1

  • centrifuge/1.0.4

  • cgal/4.9_rhel7, cgal/5.4

  • charm/charm-6.5.0-impi, charm/charm-6.5.0-ompi-gcc, charm/charm-6.5.0-ompi-intel

  • charmpp/6.10.2-openmpi-intel-2021.4.0

  • chemaxon_marvin/18.23

  • chemaxon_structure_rep/18.23

  • chimera/1.14

  • chrome/54, chrome/72

  • clair3/1.0.1

  • cloog/0.18.4

  • cmake/3.1.0, cmake/3.21.4-intel

  • cmdstan/2.18.0

  • cobra/0.19.0

  • coinutils/2.11.6

  • compass/1.0.0

  • compositeproto/0.4.2-gcc

  • comsol/6.0_mse_emery, comsol/6.0_upgrade, comsol/6.0, comsol/6.1_koch

  • connectome_workbench/1.4.2a

  • copasul/0.8.19

  • cp2k/2.3, cp2k/2.5, cp2k/5.1

  • cpio/2.13-gcc-10.4.0, cpio/2.13-intel, cpio/2.13-intel-2021.4.0

  • cplex/12.6.2 cplex/22.1.1

  • crass/1.0.1

  • crispresso2/2.2.9

  • crisprtools/0.1.8

  • cromwell/86

  • cuda/cuda_4.0.17, cuda/cuda_4.1.28, cuda/cuda_5.0.35, cuda/cuda_6.0.26_rc, cuda/cuda_7.0.28_mpich, cuda/cuda_7.0.28, cuda/cuda_7.5.18_mpich, cuda/cuda_8.0.61_mpich, cuda/11.2.2-intel

  • cufflinks/2.1.1, cufflinks/2.2.1b

  • curl/7.79.0-intel, curl/8.0.1-intel-2021.4.0

  • cutruntools/2.0

  • cython/0.22

  • cytoscape/3.4.0

  • damageproto/1.2.1-gcc

  • dbus/1.12.8-gcc

  • dcm2niix/v1.0.20220720

  • ddd/3.3.12

  • dealii/9.5.0

  • diamond/0.8.29

  • dicom/3.6.7

  • diffreps/1.55.3

  • diffutils/3.8-gcc, diffutils/3.8-intel, diffutils/3.8-intel-2021.4.0, diffutils/3.9-gcc-4.8.5, diffutils/3.9-gcc-10.4.0

  • double-conversion/3.1.5-gcc

  • doxygen/1.9.2-gcc

  • dsi_studio/latest

  • dtiplayground/0.4.1, dtiplayground/0.4.4b4

  • dynare/4.5.0, dynare/4.5.6

  • dyninst/9.3.2

  • eclipse/4.2

  • eigen/3.2.8, eigen/3.4.0-gcc, eigen/3.4.0-intel

  • elfutils/0.176

  • emacs/24.4-compute, emacs/25.3-compute

  • energyplus/23.1.0

  • enrich2/1.3.1

  • epacts/3.3.2

  • epic2/0.0.52

  • esmfold/2.0.1

  • espresso/5.0.3, espresso/6.2-d3q, espresso/6.2

  • expansionhunter/2.5.5

  • expat/2.2.0

  • fMRIPrep/20.2.1

  • fastq_utils/0.25.2

  • faststructure/1.0

  • fenics27/1.5.0

  • fftw/2.1.5-gcc, fftw/2.1.5-intel, fftw/2.1.5-mpich-intel, fftw/2.1.5-ompi-intel, fftw/3.3.3-gcc-sse2, fftw/3.3.4-openmpi-4.0.5-intel-19.0.5.281

  • findutils/4.8.0-gcc, findutils/4.8.0-intel, findutils/4.9.0-gcc-10.4.0

  • firefox/14, firefox/22, firefox/26, firefox/27, firefox/31, firefox/50

  • fixesproto/5.0-gcc

  • flex/2.6.3-gcc, flex/2.6.3-gcc-10.4.0, flex/2.6.3-intel, flex/2.6.4

  • flook/0.8.1

  • fmriprep/21.0.1, fmriprep/23.0.1_singularity, fmriprep/23.0.1

  • font-util/1.3.2-intel

  • fontconfig/2.13.1-gcc

  • fontsproto/2.1.3-gcc, fontsproto/2.1.3-intel

  • fragpipe/19.1

  • freeimage/3.18.0-gcc

  • freesurfer/7dev

  • freetype/2.7.1-intel, freetype/2.10.2-gcc, freetype/2.10.4-gcc-10.2.0

  • fribidi/1.0.5-intel

  • games/2.0.0

  • gap/4.7.5

  • gatk/3.6.0, gatk/4.0.0, gatk/4.0.4

  • gauss/gauss17

  • gawk/5.2.1-gcc-4.8.5, gawk/5.2.1-gcc-10.4.0

  • gcc/mine, gcc/4.7.0

  • gcloud/322.0.0

  • gcta/1.94.0

  • gdb/7.5, gdb/7.12, gdb/8.0.1

  • gdbm/1.18.1-intel-19.0.5.281, gdbm/1.19-intel-19.0.5.281, gdbm/1.23-gcc-4.8.5

  • gdc-client/1.3.0

  • gdk-pixbuf/2.40.0

  • geany/1.33

  • genie/3.04.00

  • gettext/0.19.4, gettext/0.21-intel-19.0.5.281, gettext/0.21.1-gcc-4.8.5

  • ghc/7.10.3, ghc/8.2.1

  • giflib/5.2.1-gcc-10.4.0

  • git/2.1.3

  • glib/2.66.2

  • glibc/2.17

  • glibmm/2.4

  • glproto/1.4.17-gcc

  • gmake/4.3-gcc, gmake/4.4.1-intel-2021.4.0

  • gnomix/12082022

  • gnumeric/1.12.38

  • go/1.20.4

  • gold/1

  • gpaw/21.1.0

  • gperf/3.1-gcc, gperf/3.1-intel

  • gradle/5.2.1

  • graphlib/3.0.0

  • grass-gis/7.8.8

  • gromacs/4.6.5, gromacs/4.6.7-cuda, gromacs/4.6.7

  • gsl/1.16-intel, gsl/2.1-gcc4.8.3

  • gstreamer/1.14

  • gtk+/gtk+-3.22.30

  • gtool/0.7.5

  • gulp/6.1.2

  • guppy/6.2.1_cpu, guppy/6.2.1_gpu

  • gurobi/6.5.2, gurobi/7.5.1, gurobi/7.5.1-3.6, gurobi/9.1.0

  • gwastools/current

  • hdf5/1.10.7-nvhpc-gcc-10.4.0

  • hemoMIPs/1.1

  • hipstr/0.6.2

  • hisat2/2.0.4

  • homer/4.8.3

  • hwloc/1.4.2, hwloc/1.11.8

  • hypre/2.9.0, hypre/2.20.0-openmpi-4.0.5-gcc-10.2.0

  • icu4c/67.1-intel

  • idba/2016_12_longread, idba/2016_12

  • idr/2.0.4

  • igv/2.8.13, igv/2.11.6, igv/2.12.0

  • impute2/2.3.2

  • imsl/fnl_7.1.0

  • indelocator/1.0

  • inputproto/2.3.2-intel

  • intel-oneapi-compilers/2023.1.0-gcc-10.4.0

  • intel-oneapi-mkl/2021.4.0-gcc

  • intel-oneapi-mpi/2021.4.0-intel

  • intel-oneapi-tbb/2021.4.0-gcc

  • intltool/0.40.0, intltool/0.51.0

  • ipopt/3.13.2

  • iread/0.8.5

  • jags/4.2.0, jags/4.3.0_qa, jags/4.3.0-gcc-5.1.0

  • jellyfish/2.2.7, jellyfish/2.3.0

  • jsoncpp/1.9.4-gcc, jsoncpp/1.9.5-gcc-10.4.0

  • julia/0.5.2, julia/0.6.2, julia/1.3.1

  • kSNP/3.0.21

  • kallisto/0.43.1

  • kbproto/1.0.7-intel

  • knitro/9.1.orig, knitro/9.1

  • krona/2.7

  • lammps/lammps-gcc-mkl, lammps/lammps-intel-mkl, lammps/lammps-intel, lammps/lammps-mpich, lammps/lammps-31Mar17-mpich

  • launchmon/1.0.1

  • layoutparser/0.3.2

  • lazarus/2.0.10

  • lcms/2.9-gcc, lcms/2.13.1

  • ldblockshow/1.40

  • ldsc/1.0.0

  • leptonica/1.74.4

  • lftp/4.8.4-fedora, lftp/4.8.4

  • libdrm/2.4.100-gcc

  • libdwarf/20190110

  • libedit/3.1-20210216-gcc

  • libepoxy/1.2

  • libffi/3.2.1

  • libfontenc/1.1.3-gcc, libfontenc/1.1.3-intel

  • libgcrypt/1.10.2-gcc-10.4.0

  • libgdiplus/2.10.9

  • libgpg-error/1.47-gcc-10.4.0

  • libice/1.0.9-intel

  • libiconv/1.17-gcc-4.8.5

  • libidn2/2.3.0-intel

  • libjpeg-turbo/2.1.0-intel

  • libjpeg/8

  • libmng/2.0.3-gcc

  • libpciaccess/0.16-intel

  • libpng/1.6.37-intel

  • libpthread-stubs/0.4-intel

  • libsigsegv/2.14-gcc-4.8.5, libsigsegv/2.14-gcc-10.4.0

  • libsm/1.2.3-intel

  • libsvm/3.21

  • libtiff/4.1.0, libtiff/4.3.0-gcc

  • libtool/2.4.2, libtool/2.4.6-gcc, libtool/2.4.6-intel, libtool/2.4.6, libtool/2.4.7-gcc-4.8.5, libtool/2.4.7-gcc-10.4.0, libtool/2.4.7-intel-2021.4.0

  • libunistring/0.9.10-intel

  • libvdwxc/0.4.0-openmpi-4.0.5-intel-19.0.5.281

  • libwayland-cursor/1.18.91

  • libx11/1.7.0-intel

  • libxau/1.0.8-intel

  • libxc/2.2.2-intel-19.0.5.281, libxc/5.1.0, libxc/6.1.0-intel-2021.4.0

  • libxcb/1.8, libxcb/1.14-intel

  • libxcomposite/0.4.4-gcc

  • libxcursor/1.1.14-gcc

  • libxdamage/1.1.4-gcc

  • libxdmcp/1.1.2-intel

  • libxext/1.3.3-intel

  • libxfixes/5.0.2-gcc

  • libxfont/1.5.2-gcc, libxfont/1.5.2-intel

  • libxi/1.7.6-gcc

  • libxkbcommon/0.8.2-gcc

  • libxkbfile/1.0.9-gcc

  • libxml2/2.10.3-gcc-4.8.5

  • libxmu/1.1.2-intel

  • libxrandr/1.5.0-gcc

  • libxrender/0.9.10-intel

  • libxscrnsaver/1.2.2-intel

  • libxslt/1.1.33-gcc-10.4.0

  • libxsmm/1.16.1-intel-19.0.5.281

  • libxt/1.1.5-intel

  • libxtst/1.2.2-gcc

  • libxxf86vm/1.1.4-gcc

  • llama-cpp-python/0.2.22

  • llvm/12.0.1-gcc, llvm/16.0.6

  • lp_solve/5.5.2.0

  • lsdyna/12.0.0

  • lua/5.1.4, lua/5.1.5

  • lumerical/device-6.0.125, lumerical/8.11.318, lumerical/8.12.631, lumerical/8.17.1057-test, lumerical/8.17.1057, lumerical/2020r2

  • lz4/1.9.3-gcc

  • lzo/2.10-gcc-10.4.0

  • m4/1.4.16-gcc-4.8.5, m4/1.4.16-gcc-10.4.0, m4/1.4.16-intel-2021.4.0, m4/1.4.16-nvhpc-23.3

  • mageck/0.5.6_py27, mageck/0.5.6_py34

  • mageck_vispr/09082016

  • magma/1.10

  • makedepf90/2.8.8

  • maker/2.31.11

  • manta/1.5.0

  • mathematica/10.3.0, mathematica/10.4.1, mathematica/12.0

  • matlab/r2013a, matlab/r2014b, matlab/r2015a, matlab/r2015b, matlab/r2020b_gcc-8.4.0

  • matlabstan/2.15.1.0

  • medaka/1.6.0

  • meep/1.1.1, meep/1.2.1

  • meson/0.60.0-gcc, meson/0.60.0-intel

  • metamap/2016

  • metaphlan/3.0.14, metaphlan/3.1.0

  • metapro/2.2.0

  • metaxa2/2.2

  • metis/5.0.2

  • mgreml/1.0.0

  • minkowskiengine/0.5.4

  • mkfontdir/1.0.7-gcc, mkfontdir/1.0.7-intel

  • mkfontscale/1.1.2-gcc, mkfontscale/1.1.2-intel

  • mlpack/3.0.4

  • modulus/22.03

  • mono/3.4.0, mono/5.0.1.1, mono/6.12.0.199

  • motif/2.3.8

  • mpb/1.5

  • mpc/1.0

  • mpfr/3.1.1

  • mpi/mpich-3.0.4-gcc-4.6.3, mpi/mpich-3.0.4-gcc-4.8.3, mpi/mpich-3.0.4-gcc-5.1.0, mpi/mpich-3.4.2-intel, mpi/mvapich2-gcc-4.8.3-cuda8, mpi/mvapich2-gcc-4.8.3

  • mrnet/4.0.0

  • mrtrix3/2018

  • mujoco-py/2.1.2.14

  • mumps/5.3.5-openmpi-4.0.5-gcc-10.2.0

  • muscle/3.8.31

  • mutect/1.1.4

  • nasm/2.15.05-gcc, nasm/2.15.05-gcc-10.4.0, nasm/2.15.05-intel

  • ncbi-toolkit/26_0_1-gcc-10.4.0

  • ncurses/6.4-gcc-4.8.5, ncurses/6.4-gcc-8.4.0

  • nda-tools/0.2.19-py-3.6, nda-tools/0.2.19-py-3.8, nda-tools/0.2.21-py-3.8, nda-tools/0.2.22-py-3.8

  • ndiff/2.0

  • netcdf-c/4.7.4-openmpi-4.0.5-intel-19.0.5.281, netcdf-c/4.8.1-openmpi-gcc, netcdf-c/4.8.1-openmpi-intel

  • netcdf-cxx/4.2-openmpi-gcc

  • netcdf-fortran/4.5.3-openmpi-intel, netcdf-fortran/4.5.3-openmpi-4.0.5-intel-19.0.5.281

  • netlib-scalapack/2.2.0-openmpi-intel-2021.4.0

  • netlogo/5.3.1, netlogo/6.0.1

  • nextflow/22.04.3

  • nextneopi/1.3.1

  • ngsutils/0.5.9

  • ninja/1.10.2-gcc, ninja/1.10.2-intel

  • nlopt/2.4.2, nlopt/2.6.1

  • nspr/4.31-gcc

  • nss/3.67-gcc

  • nvhpc/21.9-intel

  • nwchem/6.1.1/openmpi-1.6.3-intel2011.3, nwchem/6.5.0, nwchem/6.6.0-patched, nwchem/6.6.0, nwchem/6.6.1

  • ocaml/4.05.0

  • octave/3.6.3, octave/4.2.1

  • oncotator/1.9.8.0

  • openbabel/2.3.0

  • openblas/0.3.18-gcc

  • openmd/2.5, openmd/2.6

  • opera/12.16

  • orca/4.0.1.2

  • osu-micro-benchmarks/5.3.2-mpich, osu-micro-benchmarks/5.3.2

  • oxconsole/7.20

  • oxedit/7.20

  • pBWA/1.21

  • paml/4.10.6

  • pandoc/2.14.0.3-gcc

  • papi/4.1.3

  • paraview/3.98-openmpi, paraview/3.98, paraview/4.4, paraview/5.9.0

  • parsec/1.3.6

  • patchelf/0.13-gcc, patchelf/0.13-intel, patchelf/0.17.2-gcc-10.4.0

  • pbs-drmaa/1.0.19

  • pcntoolkit/0.25-py.3.6, pcntoolkit/0.25

  • pcre/8.39, pcre/8.44-gcc-4.8.5, pcre/8.44-intel, pcre/8.45-gcc-10.4.0, pcre2/10.36-gcc, pcre2/10.42-intel-2021.4.0

  • pdflib-lite/7.0.4p4

  • penncnv/1.0.5

  • perl-data-dumper/2.173-gcc

  • perl/5.14, perl/5.36.0-gcc-4.8.5

  • petsc/3.3-p7, petsc/3.4.4, petsc/3.5.1-shared, petsc/3.5.1-static, petsc/3.7.2-opt, petsc/3.7.2, petsc/3.14.4-openmpi-4.0.5-gcc-10.2.0

  • phamb/master

  • pharmcat/1.6.0

  • phast/1.4

  • phylocsf/latest

  • phyloflash/3.4.2

  • pindel/2017

  • pixman/0.40.0-intel

  • pkg-config/0.27.1

  • pkgconf/1.9.5-gcc-4.8.5

  • plink/1.07, plink/2.0-alpha-2.3, plink/2.0-alpha-3.3

  • plinkseq/0.10

  • plumed/2.6.2-openmpi-4.0.5-intel-19.0.5.281, plumed/2.9.0

  • pnetcdf/1.12.2

  • polyfun/1.0.0

  • poppler/0.47, poppler/0.48

  • povray/3.7

  • prada/1.2

  • proj/6.2.1

  • protobuf/3.1.0, protobuf/3.21.12-gcc-8.4.0

  • pvactools/3.0.1

  • py-cython/0.29.33-gcc-10.4.0

  • py-mako/1.1.4-gcc

  • py-markupsafe/1.1.1-gcc, py-markupsafe/2.0.1-gcc

  • py-pip/23.0-gcc-10.4.0

  • py-setuptools/44.1.0-gcc, py-setuptools/58.2.0-gcc, py-setuptools/58.2.0-intel

  • py-wheel/0.37.1-gcc-10.4.0

  • pypy/2.5.1

  • python/ActivePython-3.2, python/epd-7.3-2

  • qchem/4.0, qchem/4.1.2, qchem/4.3, qchem/4.4, qchem/5.0, qchem/5.2, qchem/5.4

  • qctool/1.0, qctool/1.4, qctool/1.5, qctool/2.0-rc4

  • qe/6.5

  • qhull/2015.2, qhull/2020.1-gcc-10.2.0

  • qiime2/2021.11

  • qsiprep/0.19.1

  • qt/4.6.2, qt/5.0.0

  • qt/5.9.1

  • quast/5.0.2

  • r/4.2.2-gcc

  • random-metal/0.1.0

  • randrproto/1.5.0-gcc

  • readline/6.2, readline/8.0-intel-19.0.5.281, readline/8.2-gcc-4.8.5

  • reco/0.0.1

  • recordproto/1.14.2-gcc, renderproto/0.11.1-intel

  • rfmix/2.0

  • rgt/1.0.0

  • ribotricer/1.3.2

  • rmats2sashimiplot/2.0.3

  • rnaseqc/2.3.5

  • rnashapes/2.1.6

  • root/5.34, root/6.28.02

  • rsem/1.2.28

  • ruby/2.0.0

  • rufus/latest

  • ruptura/latest

  • sage/9.4

  • salmon/0.8.2, salmon/0.9.1, salmon/1.2.1

  • samplot/1.3.0

  • samtools/0.1.19

  • sasview/5.0.6

  • scala/2.12.2

  • scalapack/2.0.2_gcc, scalapack/2.0.2_intel

  • scallop/0.9.8

  • scons/2.5.0

  • scrnaseq/2.0.0

  • scrnsaverproto/1.2.2-intel

  • sdpt3/4.0

  • shapeit/v2.r837

  • simbaathena/1.1.18

  • sirius/6.5.7-openmpi-4.0.5-gcc-10.2.0

  • slepc/3.7.4

  • slurm-drmaa/latest

  • smrtlink/11.0.0.146107

  • snpEff/4.3, snpEff/5.1

  • snptest/2.5, snptest/2.5.2

  • soapdenovo2/2.04-r240

  • soci/4.0.2-gcc

  • specfem3d_globe/7.0.0

  • speedseq/0.1.2-with-cnvnator, speedseq/0.1.2

  • spla/1.3.0-openmpi-4.0.5-intel-19.0.5.281

  • spyder/5.4.3

  • sqlite/3.19.2, sqlite/3.19.3

  • sratoolkit/2.8.0

  • stacks/2.64-gcc-9.2.0

  • stat/4.0.1

  • stata/14-b1041

  • stattransfer/14, stattransfer/15

  • stockfish/15.1

  • strdenovotools/1.0.0

  • strelka/2.9.2

  • stress/latest

  • stringtie/1.3.0

  • subread/1.5.1, subread/1.6.1

  • superlu-dist/6.4.0-openmpi-4.0.5-gcc-10.2.0

  • superlu/5.2.0

  • suppa/2.3

  • swig/3.0.0, swig/3.0.10, swig/3.0.12, swig/4.0.2_gcc-4.8.5, swig/4.0.2-gcc

  • talon/5.0

  • tar/1.34-gcc-4.8.5

  • tau/2.23.1

  • tcl/8.6.11-intel, tcl/8.6.12-intel-2021.4.0

  • telseq/2.4.1

  • tesseract/3.05.01

  • texinfo/6.5-gcc, texinfo/6.5-intel, texinfo/7.0.3-gcc-4.8.5, texinfo/7.0.3-gcc-10.4.0

  • texlive/2012

  • thermo-calc/2022b

  • tickwrite/7.1

  • tig/2.5.1

  • tobias/0.13.3

  • tomlab/277

  • toppic/1.5.3

  • tpp/6.0.0

  • trinity/2.14.0

  • uchime/4.2.40

  • unibind/latest

  • unirep/11_18_2022

  • util-macros/1.19.3-gcc, util-macros/1.19.3-gcc-10.4.0, util-macros/1.19.3-intel

  • valgrind/3.13.0

  • vasp/4.6.38, vasp/5.3, vasp/5.3.3.vtst, vasp/5.3.3, vasp/5.3.5.vtst.beef, vasp/5.3.5, vasp/5.4.1_intel_ompi, vasp/5.4.1_vtst, vasp/5.4.4-openmpi-4.0.5-intel-19.0.5.281-cuda-11.2.1, vasp/5.4.4-vtst-openmpi-4.0.5-intel-19.0.5.281

  • vcftools/current, vcftools/0.1.14, vcftools/0.1.15

  • vcontact2/0.11.0

  • velvet/1.2.10

  • vesta/3.4.4

  • viennaRNA/2.5.0

  • vim/8.0.2.7

  • visit/2.6.0, visit/2.12.2

  • voxcraft-sim/3.0

  • vtk/9.2.5

  • wannier/2.1.0_new, wannier/2.1.0

  • which/2.21-gcc

  • wine/2.0

  • wxwidgets/3.1.2

  • xander_assembler/2017

  • xcb-proto/1.14.1-intel

  • xcb-util-image/0.4.0-gcc, xcb-util-keysyms/0.4.0-gcc, xcb-util-renderutil/0.3.9-gcc, xcb-util-wm/0.4.1-gcc, xcb-util/0.4.0-gcc

  • xerces-c/3.1.1, xerces-c/3.2.3

  • xextproto/7.3.0-intel

  • xf86vidmodeproto/2.3.1-gcc

  • xkbcomp/1.4.4-gcc

  • xkbdata/1.0.1-gcc

  • xpdf/4.02

  • xproto/7.0.31-intel

  • xrandr/1.5.0-gcc

  • xtrans/1.3.5-intel

  • xz/5.4.1-gcc-4.8.5

  • yaml-cpp/0.5.3, yaml-cpp/0.6.3-gcc, yaml-cpp/0.7.0

  • yarn/1.22.4-gcc

  • z3/4.8.9-gcc

  • zlib/1.3

  • zsh/5.8-gcc-4.8.5

Quest Analytics R and RStudio Version Change - 9 October 2024

  • Updated R version on Quest Analytics Nodes from R 4.2.3 to R 4.4.0

  • Updated RStudio version to 2023.12.2-407

  • Implemented configuration change to end inactive R sessions after 12 hours